PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KN538818.1_FGP009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 324aa    MW: 35964.4 Da    PI: 4.7536
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KN538818.1_FGP009genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH13.20.0001667105555
                        HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + e+ErrRR r+N  ++ Lr +            sK ++L  A+e+Ik+Lq
  KN538818.1_FGP009  67 NLEAERRRRGRLNGNIFALRAM------------SKEATLSDAIEHIKNLQ 105
                        5689***************975............67779999999999998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.37E-1061121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-464114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.008468110IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF032243.5E-28216323No hitNo description
Gene3DG3DSA:1.25.10.108.3E-32220323IPR011989Armadillo-like helical
SuperFamilySSF483714.83E-24220323IPR016024Armadillo-type fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MPRRARARGS GGGGGGEEVK VEDDFVDSVL NFGGGGGGEE DGDDGEEEQQ QQAAAAAAMG  60
KEFKSKNLEA ERRRRGRLNG NIFALRAMSK EATLSDAIEH IKNLQNEVLE LQRQLGDSPG  120
EAWEKQGSAS CSESFVPTEN AHYQGQVELI SLGSCKYNLK IFWTKRAGLF TKVLEALCSY  180
KVQVLSLNTI SFYGYAESFF TIEVKGGLFG HPVMDHAELT TEQVLKRDIP WESYMANKLI  240
SGTCLQLLRR YDHKPESQRG PLLDEDGPSY VRVFLNILRN ISKEDTVEYV LALIDEMLAV  300
NPKRAALFYD NSLSGEDIYD PFLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0677140.0AK067714.1 Oryza sativa Japonica Group cDNA clone:J013120K21, full insert sequence.
GenBankCT8295480.0CT829548.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA104E14, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006657813.11e-110PREDICTED: transcription factor ABORTED MICROSPORES-like
SwissprotB9FXT31e-104UDT1_ORYSJ; Transcription factor UDT1
TrEMBLA0A0E0AL601e-114A0A0E0AL60_9ORYZ; Uncharacterized protein
STRINGOB07G23820.11e-110(Oryza brachyantha)
STRINGGRMZM2G163233_P011e-108(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119823036
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16910.13e-14bHLH family protein